PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01716.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 376aa    MW: 43053.8 Da    PI: 4.579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01716.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-0690113226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              k  lC ff + G+C+ G +CkF+H+
  Rsa1.0_01716.1_g00002.1  90 KSILCEFFKA-GQCQKGFKCKFSHD 113
                              6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-588114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27288115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-490113IPR000571Zinc finger, CCCH-type
SMARTSM003562.7159196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793159197IPR000571Zinc finger, CCCH-type
PfamPF165436.2E-16217297IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ASKVAAKKKK  60
EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG  120
EKIDIYSDKR DEDGDMEEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF  180
WACPNGGKEC HYRHALPPGY ILKSQMKALL EEESQKMPVE EEIENERAKL KTATQMTPAL  240
FMEWKRKKIA ERDAGLAASQ AERAKNDRMS GRELFLSNAS LFVDDAEAFE EYEREKEEEE  300
IEQKAKNKET EAGTSKSSGD AAEQTSKEVD EDEEDDDDDD DDDDDDDLDM DELDELEASL  360
SKTSIQIREQ GSSSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895349e-87AC189534.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408943.10.0hypothetical protein EUTSA_v10002021mg
SwissprotQ9SK740.0C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLV4NUF50.0V4NUF5_EUTSA; Uncharacterized protein
STRINGBra036459.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.10.0C3H family protein